| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ctcggctc | 8 | ||
| VMR_0187 | hbv-miR-b3rc-3p | 1 | ........ | 8 | 100 |
| VMR_0689 | prv-miR-3-5p | 8 | .c...... | 1 | 87 |
| VMR_0663 | prv-miR-1-5p | 3 | __...... | 8 | 75 |
| VMR_0662 | prv-miR-1-5p | 3 | __...... | 8 | 75 |
| VMR_0661 | prv-miR-1-5p | 3 | __...... | 8 | 75 |
| VMR_0660 | prv-miR-1-5p | 2 | __...... | 7 | 75 |
| VMR_0659 | prv-miR-1-5p | 3 | __...... | 8 | 75 |
| VMR_0658 | prv-miR-1-5p | 3 | __...... | 8 | 75 |
| VMR_0657 | prv-miR-1-5p | 3 | __...... | 8 | 75 |
| VMR_0188 | hbv-miR-b3rc-3p | 3 | ......__ | 8 | 75 |
| VMR_0185 | hbv-miR-b3rc-3p | 1 | __...... | 6 | 75 |
| VMR_0147 | hbv-miR-3rc-3p | 1 | __...... | 6 | 75 |
