| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ctgcgcgg | 8 | ||
| VMR_0332 | hsv2-miR-h25 | 1 | ........ | 8 | 100 |
| VMR_0452 | mdv1-miR-m1* | 3 | ......__ | 8 | 75 |
| VMR_0350 | hvt-miR-h1 | 6 | ......__ | 1 | 75 |
| VMR_0349 | hvsa-miR-hsur5-5p | 7 | __...... | 2 | 75 |
