| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ctgggagt | 8 | ||
| VMR_0647 | prv-miR-11-1 | 1 | ........ | 8 | 100 |
| VMR_0631 | prv-miR-11-1 | 1 | ........ | 8 | 100 |
| VMR_0622 | prv-miR-11-1 | 1 | ........ | 8 | 100 |
| VMR_0643 | prv-miR-11-1 | 2 | ......._ | 8 | 87 |
| VMR_0638 | prv-miR-11-1 | 2 | ......._ | 8 | 87 |
| VMR_0630 | prv-miR-11-1 | 2 | ......._ | 8 | 87 |
| VMR_0614 | prv-miR-11-1 | 2 | ......._ | 8 | 87 |
| VMR_0305 | hsv1-miR-h3 | 1 | ......c. | 8 | 87 |
| VMR_0644 | prv-miR-11-1 | 1 | __...... | 6 | 75 |
| VMR_0637 | prv-miR-11-1 | 3 | ......__ | 8 | 75 |
| VMR_0629 | prv-miR-11-1 | 3 | ......__ | 8 | 75 |
| VMR_0416 | kshv-miR-k12-8* | 6 | __...... | 1 | 75 |
| VMR_0333 | hsv2-miR-h3 | 3 | _......_ | 8 | 75 |
