| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cttccttc | 8 | ||
| VMR_1281 | wssv-miR164 | 1 | ........ | 8 | 100 |
| VMR_1201 | tumv-miR-s22 | 2 | ......._ | 8 | 87 |
| VMR_0512 | mdv2-miR-m25-5p | 1 | .c...... | 8 | 87 |
| VMR_1165 | sgiv-miR-10 | 6 | __...... | 1 | 75 |
| VMR_0527 | mghv-miR-m1-1* | 6 | ......__ | 1 | 75 |
| VMR_0494 | mdv2-miR-m17* | 3 | __...... | 8 | 75 |
| VMR_0486 | mdv2-miR-m14-3p | 8 | ......__ | 3 | 75 |
| VMR_0456 | mdv1-miR-m11-5p | 3 | _......_ | 8 | 75 |
| VMR_0351 | hvt-miR-h10 | 1 | __...... | 6 | 75 |
| VMR_0053 | blv-miR-b5-5p | 6 | ......__ | 1 | 75 |
