| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cttcgagt | 8 | ||
| VMR_0902 | rcmv-miR-r111.2-2 | 1 | ........ | 8 | 100 |
| VMR_0901 | rcmv-miR-r111.2-2 | 1 | ........ | 8 | 100 |
| VMR_0900 | rcmv-miR-r111.2-2 | 1 | ........ | 8 | 100 |
| VMR_0930 | rcmv-miR-r87-1 | 6 | ......__ | 1 | 75 |
| VMR_0929 | rcmv-miR-r87-1 | 6 | ......__ | 1 | 75 |
