| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cttctcct | 8 | ||
| VMR_1278 | wssv-miR158 | 1 | ........ | 8 | 100 |
| VMR_0868 | prv-miR-9-5p | 8 | .a...... | 1 | 87 |
| VMR_0384 | iltv-miR-i5* | 1 | ......g. | 8 | 87 |
| VMR_1275 | wssv-miR144 | 6 | ......__ | 1 | 75 |
| VMR_1265 | tumv-miR-s80 | 6 | ......__ | 1 | 75 |
| VMR_0876 | prv-miR-9-5p | 7 | __...... | 2 | 75 |
| VMR_0875 | prv-miR-9-5p | 8 | __...... | 3 | 75 |
| VMR_0872 | prv-miR-9-5p | 7 | __...... | 2 | 75 |
| VMR_0871 | prv-miR-9-5p | 8 | __...... | 3 | 75 |
| VMR_0867 | prv-miR-9-5p | 7 | __...... | 2 | 75 |
| VMR_0866 | prv-miR-9-5p | 8 | __...... | 3 | 75 |
| VMR_0863 | prv-miR-9-5p | 7 | __...... | 2 | 75 |
| VMR_0862 | prv-miR-9-5p | 8 | __...... | 3 | 75 |
| VMR_0859 | prv-miR-9-5p | 7 | __...... | 2 | 75 |
| VMR_0858 | prv-miR-9-5p | 8 | __...... | 3 | 75 |
| VMR_0855 | prv-miR-9-5p | 7 | __...... | 2 | 75 |
| VMR_0852 | prv-miR-9-5p | 7 | __...... | 2 | 75 |
| VMR_0849 | prv-miR-9-5p | 7 | __...... | 2 | 75 |
| VMR_0846 | prv-miR-9-5p | 7 | __...... | 2 | 75 |
| VMR_0845 | prv-miR-9-5p | 7 | __...... | 2 | 75 |
| VMR_0671 | prv-miR-2-5p | 2 | ......__ | 7 | 75 |
| VMR_0485 | mdv1-miR-m9-5p | 3 | _......_ | 8 | 75 |
| VMR_0421 | mcmv-miR-m01-1 | 8 | __...... | 3 | 75 |
| VMR_0386 | iltv-miR-i6* | 2 | __...... | 7 | 75 |
| VMR_0355 | hvt-miR-h13 | 3 | _......_ | 8 | 75 |
| VMR_0351 | hvt-miR-h10 | 3 | ......__ | 8 | 75 |
