| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cttcttc | 7 | ||
| VMR_1289 | wssv-miR212 | 2 | ....... | 8 | 100 |
| VMR_0383 | iltv-miR-i5 | 8 | ....... | 2 | 100 |
| VMR_1306 | wssv-miR9 | 6 | ......_ | 1 | 85 |
| VMR_1290 | wssv-miR214 | 6 | ......_ | 1 | 85 |
| VMR_1290 | wssv-miR214 | 8 | _...... | 3 | 85 |
| VMR_1280 | wssv-miR162 | 6 | ......_ | 1 | 85 |
| VMR_1280 | wssv-miR162 | 8 | _...... | 3 | 85 |
| VMR_1233 | tumv-miR-s51 | 6 | ......_ | 1 | 85 |
| VMR_1213 | tumv-miR-s33 | 8 | _...... | 3 | 85 |
| VMR_0931 | rcmv-miR-r87-1 | 6 | _...... | 1 | 85 |
| VMR_0930 | rcmv-miR-r87-1 | 8 | _...... | 3 | 85 |
| VMR_0929 | rcmv-miR-r87-1 | 8 | _...... | 3 | 85 |
| VMR_0450 | mcv-miR-m1-5p | 8 | _...... | 3 | 85 |
