Result for your query miRNA sequence
>tumv-miR-s3
cuugacug
RED =100 % Complementary sequence
.=Identical residue
blue alphabets=mismatch
_=Gap 


Acc numbermiRNAStartAlignmentEnd% Identity
Query1cttgactg8
VMR_1209  tumv-miR-s3 1........8100
VMR_1269  wssv-miR113 3......__875
VMR_0044  blv-miR-b2-5p 2__......775