| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gaagagaa | 8 | ||
| VMR_0422 | mcmv-miR-m01-2 | 1 | ........ | 8 | 100 |
| VMR_1306 | wssv-miR9 | 3 | ......__ | 8 | 75 |
| VMR_1233 | tumv-miR-s51 | 3 | ......__ | 8 | 75 |
| VMR_1174 | sgiv-miR-4 | 1 | ......__ | 6 | 75 |
| VMR_0915 | rcmv-miR-r1-2 | 7 | __...... | 2 | 75 |
| VMR_0914 | rcmv-miR-r1-2 | 7 | __...... | 2 | 75 |
| VMR_0229 | hcmv-miR-ul59-5p | 7 | __...... | 2 | 75 |
