| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gacggaa | 7 | ||
| VMR_0633 | prv-miR-11-1 | 1 | ....... | 7 | 100 |
| VMR_0624 | prv-miR-11-1 | 2 | ....... | 8 | 100 |
| VMR_1192 | tumv-miR-s14 | 2 | _...... | 7 | 85 |
| VMR_0937 | rcmv-miR-r95.1-1 | 1 | ......_ | 6 | 85 |
| VMR_0650 | prv-miR-11-1 | 3 | ......_ | 8 | 85 |
| VMR_0648 | prv-miR-11-1 | 1 | _...... | 6 | 85 |
| VMR_0639 | prv-miR-11-1 | 3 | ......_ | 8 | 85 |
| VMR_0632 | prv-miR-11-1 | 3 | ......_ | 8 | 85 |
| VMR_0623 | prv-miR-11-1 | 3 | ......_ | 8 | 85 |
| VMR_0255 | hhv6b-miR-ro6-3-5p | 1 | ......_ | 6 | 85 |
