| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gacggaag | 8 | ||
| VMR_0633 | prv-miR-11-1 | 1 | ........ | 8 | 100 |
| VMR_0648 | prv-miR-11-1 | 1 | _....... | 7 | 87 |
| VMR_0624 | prv-miR-11-1 | 2 | ......._ | 8 | 87 |
| VMR_1192 | tumv-miR-s14 | 2 | _......_ | 7 | 75 |
| VMR_0937 | rcmv-miR-r95.1-1 | 1 | ......__ | 6 | 75 |
| VMR_0650 | prv-miR-11-1 | 3 | ......__ | 8 | 75 |
| VMR_0640 | prv-miR-11-1 | 1 | __...... | 6 | 75 |
| VMR_0639 | prv-miR-11-1 | 3 | ......__ | 8 | 75 |
| VMR_0634 | prv-miR-11-1 | 1 | __...... | 6 | 75 |
| VMR_0632 | prv-miR-11-1 | 3 | ......__ | 8 | 75 |
| VMR_0623 | prv-miR-11-1 | 3 | ......__ | 8 | 75 |
| VMR_0255 | hhv6b-miR-ro6-3-5p | 1 | ......__ | 6 | 75 |
