| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gacggagt | 8 | ||
| VMR_0255 | hhv6b-miR-ro6-3-5p | 1 | ........ | 8 | 100 |
| VMR_0937 | rcmv-miR-r95.1-1 | 1 | ......._ | 7 | 87 |
| VMR_0650 | prv-miR-11-1 | 3 | ......__ | 8 | 75 |
| VMR_0639 | prv-miR-11-1 | 3 | ......__ | 8 | 75 |
| VMR_0633 | prv-miR-11-1 | 1 | ......__ | 6 | 75 |
| VMR_0632 | prv-miR-11-1 | 3 | ......__ | 8 | 75 |
| VMR_0624 | prv-miR-11-1 | 2 | ......__ | 7 | 75 |
| VMR_0623 | prv-miR-11-1 | 3 | ......__ | 8 | 75 |
| VMR_0507 | mdv2-miR-m23* | 8 | _......_ | 3 | 75 |
| VMR_0484 | mdv1-miR-m9-3p | 8 | __...... | 3 | 75 |
