| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gactcgga | 8 | ||
| VMR_0936 | rcmv-miR-r91-1 | 1 | ........ | 8 | 100 |
| VMR_0935 | rcmv-miR-r91-1 | 2 | ......._ | 8 | 87 |
| VMR_0933 | rcmv-miR-r91-1 | 2 | ......._ | 8 | 87 |
| VMR_0342 | hsv2-miR-h9-5p | 1 | __...... | 6 | 75 |
| VMR_0026 | bhv1-miR-b5 | 1 | __...... | 6 | 75 |
