| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gaggggt | 7 | ||
| VMR_0153 | hbv-miR-b14rc-3p | 2 | ....... | 8 | 100 |
| VMR_0151 | hbv-miR-b14rc-3p | 2 | ....... | 8 | 100 |
| VMR_1182 | sv40-miR-s1-5p | 2 | ......_ | 7 | 85 |
| VMR_0924 | rcmv-miR-r43.1-2 | 1 | _...... | 6 | 85 |
| VMR_0584 | ohv2-miR-6 | 2 | _...... | 7 | 85 |
| VMR_0540 | mghv-miR-m1-2-5p | 2 | ......_ | 7 | 85 |
| VMR_0499 | mdv2-miR-m19-5p | 6 | ......_ | 1 | 85 |
| VMR_0340 | hsv2-miR-h7-5p | 3 | _...... | 8 | 85 |
| VMR_0328 | hsv2-miR-h22 | 1 | _...... | 6 | 85 |
| VMR_0315 | hsv1-miR-h7 | 3 | _...... | 8 | 85 |
| VMR_0152 | hbv-miR-b14rc-3p | 3 | ......_ | 8 | 85 |
| VMR_0150 | hbv-miR-b14rc-3p | 3 | ......_ | 8 | 85 |
| VMR_0149 | hbv-miR-b14rc-3p | 3 | ......_ | 8 | 85 |
