| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gagttac | 7 | ||
| VMR_0455 | mdv1-miR-m11-3p | 2 | ....... | 8 | 100 |
| VMR_1049 | rlcv-miR-rl1-35-3p | 7 | _...... | 2 | 85 |
| VMR_1048 | rlcv-miR-rl1-35-3p | 6 | _...... | 1 | 85 |
| VMR_1047 | rlcv-miR-rl1-35-3p | 7 | _...... | 2 | 85 |
| VMR_1046 | rlcv-miR-rl1-35-3p | 7 | _...... | 2 | 85 |
| VMR_1045 | rlcv-miR-rl1-35-3p | 6 | _...... | 1 | 85 |
| VMR_1044 | rlcv-miR-rl1-35-3p | 7 | _...... | 2 | 85 |
| VMR_1043 | rlcv-miR-rl1-35-3p | 7 | _...... | 2 | 85 |
| VMR_1042 | rlcv-miR-rl1-35-3p | 7 | _...... | 2 | 85 |
| VMR_0578 | ohv2-miR-17-9 | 3 | ......_ | 8 | 85 |
| VMR_0102 | ebv-miR-bart13 | 7 | _...... | 2 | 85 |
