| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gatcttc | 7 | ||
| VMR_0402 | kshv-miR-k12-2* | 1 | ....... | 7 | 100 |
| VMR_0216 | hbv-miR-b8-5p | 1 | ....... | 7 | 100 |
| VMR_0212 | hbv-miR-b8-5p | 1 | ....... | 7 | 100 |
| VMR_0209 | hbv-miR-b8-5p | 1 | ....... | 7 | 100 |
| VMR_0207 | hbv-miR-b8-5p | 2 | ....... | 8 | 100 |
| VMR_0204 | hbv-miR-b8-5p | 2 | ....... | 8 | 100 |
| VMR_0203 | hbv-miR-b8-5p | 1 | ....... | 7 | 100 |
| VMR_0201 | hbv-miR-b8-3p | 1 | ....... | 7 | 100 |
| VMR_1276 | wssv-miR154-3p | 1 | _...... | 6 | 85 |
| VMR_0814 | prv-miR-8-5p | 8 | _...... | 3 | 85 |
| VMR_0213 | hbv-miR-b8-5p | 1 | _...... | 6 | 85 |
| VMR_0210 | hbv-miR-b8-5p | 1 | _...... | 6 | 85 |
