| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gatggaag | 8 | ||
| VMR_0490 | mdv2-miR-m15* | 1 | ........ | 8 | 100 |
| VMR_0290 | hsv1-miR-h1 | 1 | ........ | 8 | 100 |
| VMR_0525 | mdv2-miR-m32* | 8 | ......._ | 2 | 87 |
| VMR_0337 | hsv2-miR-h6 | 2 | _....... | 8 | 87 |
| VMR_0314 | hsv1-miR-h6-5p | 1 | .g...... | 8 | 87 |
| VMR_1248 | tumv-miR-s65 | 7 | ......__ | 2 | 75 |
| VMR_1206 | tumv-miR-s27 | 2 | ......__ | 7 | 75 |
| VMR_1190 | tumv-miR-s12 | 2 | ......__ | 7 | 75 |
| VMR_1019 | rlcv-miR-rl1-28-5p | 1 | __...... | 6 | 75 |
| VMR_0977 | rlcv-miR-rl1-17-5p | 2 | ......__ | 7 | 75 |
| VMR_1020 | rlcv-miR-rl1-28-5p | 1 | __...... | 6 | 75 |
| VMR_0978 | rlcv-miR-rl1-17-5p | 2 | ......__ | 7 | 75 |
| VMR_0742 | prv-miR-5-5p | 3 | ......__ | 8 | 75 |
| VMR_0737 | prv-miR-5-5p | 2 | ......__ | 7 | 75 |
| VMR_0461 | mdv1-miR-m13 | 3 | _......_ | 8 | 75 |
| VMR_0450 | mcv-miR-m1-5p | 1 | __...... | 6 | 75 |
| VMR_0379 | iltv-miR-i1* | 8 | _......_ | 3 | 75 |
| VMR_0257 | hhv6b-miR-ro6-4* | 3 | ......__ | 8 | 75 |
