| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gcaccat | 7 | ||
| VMR_1187 | tumv-miR-s1 | 2 | ....... | 8 | 100 |
| VMR_0420 | kun-miR-1 | 6 | ......_ | 1 | 85 |
| VMR_1055 | rlcv-miR-rl1-5-3p | 2 | ......_ | 7 | 85 |
| VMR_0502 | mdv2-miR-m21 | 3 | ......_ | 8 | 85 |
| VMR_0371 | hvt-miR-h5 | 8 | ......_ | 3 | 85 |
| VMR_0126 | ebv-miR-bart3-3p | 2 | ......_ | 7 | 85 |
| VMR_0124 | ebv-miR-bart3 | 2 | ......_ | 7 | 85 |
| VMR_0049 | blv-miR-b4-3p | 3 | ......_ | 8 | 85 |
| VMR_0047 | blv-miR-b4 | 3 | ......_ | 8 | 85 |
| VMR_0050 | blv-miR-b4-3p | 3 | ......_ | 8 | 85 |
| VMR_0048 | blv-miR-b4-3p | 3 | ......_ | 8 | 85 |
