| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gcacgtc | 7 | ||
| VMR_1139 | rrv-miR-rr1-7-3p | 2 | ....... | 8 | 100 |
| VMR_1138 | rrv-miR-rr1-7-3p | 2 | ....... | 8 | 100 |
| VMR_1137 | rrv-miR-rr1-7-3p | 2 | ....... | 8 | 100 |
| VMR_1136 | rrv-miR-rr1-7-3p | 2 | ....... | 8 | 100 |
| VMR_1173 | sgiv-miR-3 | 8 | ......_ | 3 | 85 |
| VMR_0899 | rcmv-miR-r111.2-1 | 7 | ......_ | 2 | 85 |
| VMR_0898 | rcmv-miR-r111.2-1 | 7 | ......_ | 2 | 85 |
| VMR_0523 | mdv2-miR-m30* | 8 | _...... | 3 | 85 |
| VMR_0363 | hvt-miR-h17* | 3 | _...... | 8 | 85 |
