| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gcatggaa | 8 | ||
| VMR_0461 | mdv1-miR-m13 | 1 | ........ | 8 | 100 |
| VMR_0078 | dev-miR-d21-3p | 8 | ......._ | 2 | 87 |
| VMR_1170 | sgiv-miR-14 | 2 | _......_ | 7 | 75 |
| VMR_0525 | mdv2-miR-m32* | 7 | __...... | 2 | 75 |
| VMR_0490 | mdv2-miR-m15* | 2 | __...... | 7 | 75 |
| VMR_0379 | iltv-miR-i1* | 8 | __...... | 3 | 75 |
| VMR_0337 | hsv2-miR-h6 | 2 | __...... | 7 | 75 |
| VMR_0290 | hsv1-miR-h1 | 2 | __...... | 7 | 75 |
