| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gccgcctc | 8 | ||
| VMR_1015 | rlcv-miR-rl1-27-5p | 1 | ........ | 8 | 100 |
| VMR_1017 | rlcv-miR-rl1-27-5p | 1 | ........ | 8 | 100 |
| VMR_1016 | rlcv-miR-rl1-27-5p | 1 | ........ | 8 | 100 |
| VMR_1305 | wssv-miR83 | 6 | ......__ | 1 | 75 |
| VMR_1171 | sgiv-miR-1-5p | 8 | _......_ | 3 | 75 |
| VMR_0802 | prv-miR-8-5p | 7 | _......_ | 2 | 75 |
| VMR_0275 | hsv1-miR-114783 | 7 | __...... | 2 | 75 |
| VMR_0253 | hhv6b-miR-ro6-2* | 2 | ......__ | 7 | 75 |
| VMR_0015 | bfv-miR-bf2-3p | 8 | _......_ | 3 | 75 |
| VMR_0014 | bfv-miR-bf2-3p | 8 | _......_ | 3 | 75 |
| VMR_0013 | bfv-miR-bf2-3p | 8 | _......_ | 3 | 75 |
| VMR_0012 | bfv-miR-bf2-3p | 8 | _......_ | 3 | 75 |
| VMR_0011 | bfv-miR-bf2-3p | 8 | _......_ | 3 | 75 |
| VMR_0010 | bfv-miR-bf2-3p | 8 | _......_ | 3 | 75 |
