| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gccgcgt | 7 | ||
| VMR_0427 | mcmv-miR-m01-4* | 2 | ....... | 8 | 100 |
| VMR_0280 | hsv1-miR-38539 | 3 | ......_ | 8 | 85 |
| VMR_0037 | bhv5-miR-b8 | 6 | ......_ | 1 | 85 |
