| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gccgggg | 7 | ||
| VMR_0175 | hbv-miR-b21rc-5p | 2 | ....... | 8 | 100 |
| VMR_0932 | rcmv-miR-R90-1 | 3 | _...... | 8 | 85 |
| VMR_0779 | prv-miR-7-5p | 1 | _...... | 6 | 85 |
| VMR_0778 | prv-miR-7-5p | 2 | _...... | 7 | 85 |
| VMR_0775 | prv-miR-7-5p | 2 | _...... | 7 | 85 |
| VMR_0774 | prv-miR-7-5p | 1 | _...... | 6 | 85 |
| VMR_0771 | prv-miR-7-5p | 1 | _...... | 6 | 85 |
| VMR_0770 | prv-miR-7-5p | 2 | _...... | 7 | 85 |
| VMR_0767 | prv-miR-7-5p | 1 | _...... | 6 | 85 |
| VMR_0764 | prv-miR-7-5p | 1 | _...... | 6 | 85 |
| VMR_0763 | prv-miR-7-5p | 2 | _...... | 7 | 85 |
| VMR_0761 | prv-miR-7-5p | 2 | _...... | 7 | 85 |
| VMR_0689 | prv-miR-3-5p | 3 | ......_ | 8 | 85 |
| VMR_0564 | ohv2-miR-17-2 | 7 | _...... | 2 | 85 |
| VMR_0318 | hsv1-miR-h8* | 8 | _...... | 3 | 85 |
| VMR_0297 | hsv1-miR-h15 | 8 | _...... | 3 | 85 |
| VMR_0176 | hbv-miR-b21rc-5p | 3 | ......_ | 8 | 85 |
| VMR_0173 | hbv-miR-b21rc-5p | 3 | ......_ | 8 | 85 |
| VMR_0171 | hbv-miR-b21rc-5p | 3 | ......_ | 8 | 85 |
| VMR_0179 | hbv-miR-b2-3p | 3 | ......_ | 8 | 85 |
