| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gcctgttt | 8 | ||
| VMR_1181 | sv40-miR-s1-3p | 1 | ........ | 8 | 100 |
| VMR_0645 | prv-miR-11-1 | 2 | _......_ | 7 | 75 |
| VMR_0617 | prv-miR-11-1 | 3 | _......_ | 8 | 75 |
| VMR_0362 | hvt-miR-h17 | 7 | __...... | 2 | 75 |
