| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gcgaagat | 8 | ||
| VMR_0814 | prv-miR-8-5p | 1 | ........ | 8 | 100 |
| VMR_0213 | hbv-miR-b8-5p | 8 | .t...... | 1 | 87 |
| VMR_0210 | hbv-miR-b8-5p | 8 | .t...... | 1 | 87 |
| VMR_1276 | wssv-miR154-3p | 6 | __...... | 1 | 75 |
| VMR_0976 | rlcv-miR-rl1-17-3p | 8 | ......__ | 3 | 75 |
| VMR_0930 | rcmv-miR-r87-1 | 2 | _......_ | 7 | 75 |
| VMR_0929 | rcmv-miR-r87-1 | 2 | _......_ | 7 | 75 |
| VMR_0822 | prv-miR-8-5p | 3 | ......__ | 8 | 75 |
| VMR_0443 | mcmv-miR-m59-2 | 3 | _......_ | 8 | 75 |
| VMR_0402 | kshv-miR-k12-2* | 7 | __...... | 2 | 75 |
| VMR_0216 | hbv-miR-b8-5p | 7 | __...... | 2 | 75 |
| VMR_0212 | hbv-miR-b8-5p | 7 | __...... | 2 | 75 |
| VMR_0209 | hbv-miR-b8-5p | 7 | __...... | 2 | 75 |
| VMR_0207 | hbv-miR-b8-5p | 8 | __...... | 3 | 75 |
| VMR_0204 | hbv-miR-b8-5p | 8 | __...... | 3 | 75 |
| VMR_0203 | hbv-miR-b8-5p | 7 | __...... | 2 | 75 |
| VMR_0201 | hbv-miR-b8-3p | 7 | __...... | 2 | 75 |
