| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gcgccac | 7 | ||
| VMR_0414 | kshv-miR-k12-7-5p | 2 | ....... | 8 | 100 |
| VMR_0413 | kshv-miR-k12-7* | 2 | ....... | 8 | 100 |
| VMR_0299 | hsv1-miR-h17 | 6 | ......_ | 1 | 85 |
