| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gcggcccc | 8 | ||
| VMR_0184 | hbv-miR-b2rc | 1 | ........ | 8 | 100 |
| VMR_0297 | hsv1-miR-h15 | 1 | __...... | 6 | 75 |
| VMR_0131 | ebv-miR-bart5* | 8 | _......_ | 3 | 75 |
