| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gcgggca | 7 | ||
| VMR_0031 | bhv1-miR-b8-5p | 2 | ....... | 8 | 100 |
| VMR_0514 | mdv2-miR-m26* | 2 | _...... | 7 | 85 |
| VMR_0272 | hsv1-miR-106947b | 3 | ......_ | 8 | 85 |
