| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gcgggggt | 8 | ||
| VMR_0033 | bhv5-miR-B11 | 1 | ........ | 8 | 100 |
| VMR_0766 | prv-miR-7-5p | 2 | _....... | 8 | 87 |
| VMR_0844 | prv-miR-9-3p | 7 | ......._ | 1 | 87 |
| VMR_0311 | hsv1-miR-h5-5p | 1 | .g...... | 8 | 87 |
| VMR_0897 | rcmv-miR-r111.1-3 | 2 | _......_ | 7 | 75 |
| VMR_0896 | rcmv-miR-r111.1-3 | 2 | _......_ | 7 | 75 |
| VMR_0780 | prv-miR-7-5p | 1 | _......_ | 6 | 75 |
| VMR_0780 | prv-miR-7-5p | 3 | __...... | 8 | 75 |
| VMR_0779 | prv-miR-7-5p | 2 | _......_ | 7 | 75 |
| VMR_0778 | prv-miR-7-5p | 3 | _......_ | 8 | 75 |
| VMR_0776 | prv-miR-7-5p | 1 | _......_ | 6 | 75 |
| VMR_0776 | prv-miR-7-5p | 3 | __...... | 8 | 75 |
| VMR_0775 | prv-miR-7-5p | 3 | _......_ | 8 | 75 |
| VMR_0774 | prv-miR-7-5p | 2 | _......_ | 7 | 75 |
| VMR_0772 | prv-miR-7-5p | 1 | _......_ | 6 | 75 |
| VMR_0772 | prv-miR-7-5p | 3 | __...... | 8 | 75 |
| VMR_0771 | prv-miR-7-5p | 2 | _......_ | 7 | 75 |
| VMR_0770 | prv-miR-7-5p | 3 | _......_ | 8 | 75 |
| VMR_0768 | prv-miR-7-5p | 1 | _......_ | 6 | 75 |
| VMR_0768 | prv-miR-7-5p | 3 | __...... | 8 | 75 |
| VMR_0767 | prv-miR-7-5p | 2 | _......_ | 7 | 75 |
| VMR_0765 | prv-miR-7-5p | 3 | _......_ | 8 | 75 |
| VMR_0764 | prv-miR-7-5p | 2 | _......_ | 7 | 75 |
| VMR_0763 | prv-miR-7-5p | 3 | _......_ | 8 | 75 |
| VMR_0761 | prv-miR-7-5p | 3 | _......_ | 8 | 75 |
| VMR_0843 | prv-miR-9-3p | 8 | _......_ | 3 | 75 |
| VMR_0840 | prv-miR-9-3p | 8 | _......_ | 3 | 75 |
| VMR_0837 | prv-miR-9-3p | 8 | _......_ | 3 | 75 |
| VMR_0668 | prv-miR-2-3p | 2 | ......__ | 7 | 75 |
| VMR_0667 | prv-miR-2-3p | 2 | ......__ | 7 | 75 |
| VMR_0666 | prv-miR-2-3p | 2 | ......__ | 7 | 75 |
| VMR_0665 | prv-miR-2-3p | 2 | ......__ | 7 | 75 |
| VMR_0465 | mdv1-miR-m3* | 3 | __...... | 8 | 75 |
| VMR_0318 | hsv1-miR-h8* | 7 | _......_ | 2 | 75 |
| VMR_0036 | bhv5-miR-b14 | 1 | _......_ | 6 | 75 |
| VMR_0036 | bhv5-miR-b14 | 3 | __...... | 8 | 75 |
