| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gcgtgtt | 7 | ||
| VMR_1125 | rrv-miR-rr1-5-3p | 2 | ....... | 8 | 100 |
| VMR_1124 | rrv-miR-rr1-5-3p | 2 | ....... | 8 | 100 |
| VMR_1237 | tumv-miR-s55 | 2 | ......_ | 7 | 85 |
| VMR_1179 | sgiv-miR-9 | 8 | _...... | 3 | 85 |
| VMR_0688 | prv-miR-3-3p | 8 | ......_ | 3 | 85 |
| VMR_0687 | prv-miR-3-3p | 8 | ......_ | 3 | 85 |
| VMR_0347 | hvsa-miR-hsur4-5p | 3 | _...... | 8 | 85 |
| VMR_0042 | blv-miR-b2-3p | 2 | ......_ | 7 | 85 |
| VMR_0043 | blv-miR-b2-3p | 2 | ......_ | 7 | 85 |
