| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gcgttatg | 8 | ||
| VMR_0068 | dev-miR-d14-3p | 1 | ........ | 8 | 100 |
| VMR_1014 | rlcv-miR-rl1-27-3p | 8 | __...... | 3 | 75 |
| VMR_0327 | hsv2-miR-h21 | 6 | _......_ | 1 | 75 |
| VMR_0098 | ebv-miR-bart10_-1_5 | 7 | __...... | 2 | 75 |
| VMR_0096 | ebv-miR-bart10 | 8 | __...... | 3 | 75 |
| VMR_0045 | blv-miR-b3-3p | 6 | ......__ | 1 | 75 |
