| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gctacacc | 8 | ||
| VMR_1013 | rlcv-miR-rl1-26-5p | 1 | ........ | 8 | 100 |
| VMR_1167 | sgiv-miR-12 | 1 | _....... | 7 | 87 |
| VMR_1285 | wssv-miR197 | 1 | __...... | 6 | 75 |
| VMR_0536 | mghv-miR-m1-14-3p | 2 | ......__ | 7 | 75 |
| VMR_0466 | mdv1-miR-m31 | 2 | ......__ | 7 | 75 |
| VMR_0357 | hvt-miR-h14* | 2 | ......__ | 7 | 75 |
| VMR_0291 | hsv1-miR-h1* | 1 | __...... | 6 | 75 |
