| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ggaagtg | 7 | ||
| VMR_0527 | mghv-miR-m1-1* | 2 | ....... | 8 | 100 |
| VMR_0313 | hsv1-miR-h6-3p | 7 | ....... | 1 | 100 |
| VMR_0312 | hsv1-miR-h6 | 7 | ....... | 1 | 100 |
| VMR_1275 | wssv-miR144 | 3 | _...... | 8 | 85 |
| VMR_0755 | prv-miR-7-3p | 8 | _...... | 3 | 85 |
