| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ggagttct | 8 | ||
| VMR_1257 | tumv-miR-s73 | 1 | ........ | 8 | 100 |
| VMR_1198 | tumv-miR-s2 | 3 | _......_ | 8 | 75 |
| VMR_0484 | mdv1-miR-m9-3p | 7 | ......__ | 2 | 75 |
| VMR_0335 | hsv2-miR-h4-5p | 1 | _......_ | 6 | 75 |
| VMR_0182 | hbv-miR-b26-5p | 2 | _......_ | 7 | 75 |
| VMR_0183 | hbv-miR-b26-5p | 2 | _......_ | 7 | 75 |
