| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ggtgagag | 8 | ||
| VMR_1228 | tumv-miR-s47 | 1 | ........ | 8 | 100 |
| VMR_0806 | prv-miR-8-5p | 1 | ........ | 8 | 100 |
| VMR_0801 | prv-miR-8-5p | 1 | ........ | 8 | 100 |
| VMR_0798 | prv-miR-8-5p | 1 | ........ | 8 | 100 |
| VMR_0654 | prv-miR-1-3p | 8 | ........ | 1 | 100 |
| VMR_0652 | prv-miR-1-3p | 8 | ........ | 1 | 100 |
| VMR_0823 | prv-miR-8-5p | 1 | _....... | 7 | 87 |
| VMR_0815 | prv-miR-8-5p | 1 | _....... | 7 | 87 |
| VMR_0811 | prv-miR-8-5p | 1 | _....... | 7 | 87 |
| VMR_0807 | prv-miR-8-5p | 1 | _....... | 7 | 87 |
| VMR_0805 | prv-miR-8-5p | 2 | ......._ | 8 | 87 |
| VMR_0656 | prv-miR-1-3p | 7 | ......._ | 1 | 87 |
| VMR_0655 | prv-miR-1-3p | 7 | ......._ | 1 | 87 |
| VMR_0653 | prv-miR-1-3p | 7 | ......._ | 1 | 87 |
| VMR_0651 | prv-miR-1-3p | 7 | ......._ | 1 | 87 |
| VMR_1238 | tumv-miR-s56 | 8 | _......_ | 3 | 75 |
| VMR_0831 | prv-miR-8-loop | 1 | __...... | 6 | 75 |
| VMR_0830 | prv-miR-8-loop | 1 | __...... | 6 | 75 |
| VMR_0829 | prv-miR-8-loop | 1 | __...... | 6 | 75 |
| VMR_0828 | prv-miR-8-loop | 1 | __...... | 6 | 75 |
| VMR_0825 | prv-miR-8-loop | 1 | __...... | 6 | 75 |
| VMR_0824 | prv-miR-8-loop | 1 | __...... | 6 | 75 |
| VMR_0541 | mghv-miR-m1-3 | 3 | ......__ | 8 | 75 |
