| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ggtggaag | 8 | ||
| VMR_0314 | hsv1-miR-h6-5p | 1 | ........ | 8 | 100 |
| VMR_1258 | tumv-miR-s74 | 8 | ......._ | 2 | 87 |
| VMR_0490 | mdv2-miR-m15* | 1 | .a...... | 8 | 87 |
| VMR_0290 | hsv1-miR-h1 | 1 | .a...... | 8 | 87 |
| VMR_0058 | bmnpv-miR-4 | 1 | ......t. | 8 | 87 |
| VMR_1256 | tumv-miR-s72 | 2 | _......_ | 7 | 75 |
| VMR_1019 | rlcv-miR-rl1-28-5p | 1 | __...... | 6 | 75 |
| VMR_1020 | rlcv-miR-rl1-28-5p | 1 | __...... | 6 | 75 |
| VMR_0909 | rcmv-miR-r111.2-5 | 6 | _......_ | 1 | 75 |
| VMR_0450 | mcv-miR-m1-5p | 1 | __...... | 6 | 75 |
| VMR_0337 | hsv2-miR-h6 | 3 | __...... | 8 | 75 |
