| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ggtgggcc | 8 | ||
| VMR_1063 | rlcv-miR-rl1-8-3p | 1 | ........ | 8 | 100 |
| VMR_1062 | rlcv-miR-rl1-8-3p | 1 | ........ | 8 | 100 |
| VMR_1060 | rlcv-miR-rl1-7-3p | 2 | _....... | 8 | 87 |
| VMR_1059 | rlcv-miR-rl1-7-3p | 2 | _....... | 8 | 87 |
| VMR_0158 | hbv-miR-b19-5p | 1 | ......._ | 7 | 87 |
| VMR_0131 | ebv-miR-bart5* | 1 | _....... | 7 | 87 |
| VMR_0972 | rlcv-miR-rl1-15-5p | 7 | ......__ | 2 | 75 |
| VMR_0971 | rlcv-miR-rl1-15-5p | 7 | ......__ | 2 | 75 |
| VMR_0808 | prv-miR-8-5p | 2 | ......__ | 7 | 75 |
| VMR_0343 | hvav-miR-1 | 3 | _......_ | 8 | 75 |
| VMR_0341 | hsv2-miR-h9-3p | 8 | ......__ | 3 | 75 |
| VMR_0200 | hbv-miR-b7-5p | 3 | __...... | 8 | 75 |
| VMR_0199 | hbv-miR-b7-5p | 3 | __...... | 8 | 75 |
| VMR_0196 | hbv-miR-b7-5p | 3 | __...... | 8 | 75 |
| VMR_0157 | hbv-miR-b19-5p | 1 | _......_ | 6 | 75 |
| VMR_0156 | hbv-miR-b19-5p | 1 | _......_ | 6 | 75 |
| VMR_0155 | hbv-miR-b19-5p | 1 | _......_ | 6 | 75 |
| VMR_0154 | hbv-miR-b19-5p | 1 | _......_ | 6 | 75 |
