| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ggtggtgg | 8 | ||
| VMR_1241 | tumv-miR-s59 | 1 | ........ | 8 | 100 |
| VMR_1268 | tumv-miR-s9 | 1 | .t...... | 8 | 87 |
| VMR_1249 | tumv-miR-s66 | 1 | .t...... | 8 | 87 |
| VMR_0548 | mghv-miR-m1-6* | 8 | ......t. | 1 | 87 |
| VMR_1055 | rlcv-miR-rl1-5-3p | 8 | _......_ | 3 | 75 |
| VMR_1053 | rlcv-miR-rl1-4-3p | 6 | _......_ | 1 | 75 |
| VMR_0986 | rlcv-miR-rl1-19-3p | 8 | _......_ | 3 | 75 |
| VMR_0985 | rlcv-miR-rl1-19-3p | 8 | _......_ | 3 | 75 |
| VMR_0758 | prv-miR-7-3p | 6 | ......__ | 1 | 75 |
| VMR_0757 | prv-miR-7-3p | 6 | ......__ | 1 | 75 |
| VMR_0756 | prv-miR-7-3p | 6 | ......__ | 1 | 75 |
| VMR_0754 | prv-miR-7-3p | 6 | ......__ | 1 | 75 |
| VMR_0126 | ebv-miR-bart3-3p | 8 | _......_ | 3 | 75 |
| VMR_0124 | ebv-miR-bart3 | 8 | _......_ | 3 | 75 |
