| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ggtgttg | 7 | ||
| VMR_0396 | kshv-miR-k12-10b | 2 | ....... | 8 | 100 |
| VMR_1273 | wssv-miR129 | 3 | ......_ | 8 | 85 |
| VMR_1216 | tumv-miR-s36 | 1 | ......_ | 6 | 85 |
| VMR_1096 | rrv-miR-rr1-15-3p | 3 | _...... | 8 | 85 |
| VMR_1095 | rrv-miR-rr1-15-3p | 3 | _...... | 8 | 85 |
| VMR_0782 | prv-miR-8-3p | 1 | ......_ | 6 | 85 |
| VMR_0522 | mdv2-miR-m30 | 6 | _...... | 1 | 85 |
| VMR_0394 | kshv-miR-k12-10a | 3 | _...... | 8 | 85 |
| VMR_0391 | kshv-miR-k10b_+1_5 | 3 | ......_ | 8 | 85 |
