Result for your query miRNA sequence
>rcmv-miR-r1-1
guaagaug

RED =100 % Complementary sequence
.=Identical residue
blue alphabets=mismatch
_=Gap


Acc numbermiRNAStartAlignmentEnd% Identity
Query1gtaagatg8
VMR_0888 rcmv-miR-r1-1 1........8100
VMR_0887 rcmv-miR-r1-1 1........8100
VMR_0886 rcmv-miR-r1-1 1........8100
VMR_0885 rcmv-miR-r1-1 1........8100
VMR_0884 rcmv-miR-r1-1 1........8100
VMR_0504 mdv2-miR-m22 6......__175
VMR_0338 hsv2-miR-h6* 8__......375