| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gtagagt | 7 | ||
| VMR_0309 | hsv1-miR-h4-5p | 2 | ....... | 8 | 100 |
| VMR_0307 | hsv1-miR-h4 | 2 | ....... | 8 | 100 |
| VMR_0578 | ohv2-miR-17-9 | 1 | _...... | 6 | 85 |
