| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gtctcctg | 8 | ||
| VMR_0386 | iltv-miR-i6* | 1 | ........ | 8 | 100 |
| VMR_1278 | wssv-miR158 | 3 | _......_ | 8 | 75 |
| VMR_1277 | wssv-miR154-5p | 6 | __...... | 1 | 75 |
| VMR_1200 | tumv-miR-s21 | 8 | __...... | 3 | 75 |
| VMR_0876 | prv-miR-9-5p | 7 | _......_ | 2 | 75 |
| VMR_0875 | prv-miR-9-5p | 8 | _......_ | 3 | 75 |
| VMR_0872 | prv-miR-9-5p | 7 | _......_ | 2 | 75 |
| VMR_0871 | prv-miR-9-5p | 8 | _......_ | 3 | 75 |
| VMR_0868 | prv-miR-9-5p | 6 | _......_ | 1 | 75 |
| VMR_0867 | prv-miR-9-5p | 7 | _......_ | 2 | 75 |
| VMR_0866 | prv-miR-9-5p | 8 | _......_ | 3 | 75 |
| VMR_0863 | prv-miR-9-5p | 7 | _......_ | 2 | 75 |
| VMR_0862 | prv-miR-9-5p | 8 | _......_ | 3 | 75 |
| VMR_0859 | prv-miR-9-5p | 7 | _......_ | 2 | 75 |
| VMR_0858 | prv-miR-9-5p | 8 | _......_ | 3 | 75 |
| VMR_0855 | prv-miR-9-5p | 7 | _......_ | 2 | 75 |
| VMR_0852 | prv-miR-9-5p | 7 | _......_ | 2 | 75 |
| VMR_0849 | prv-miR-9-5p | 7 | _......_ | 2 | 75 |
| VMR_0846 | prv-miR-9-5p | 7 | _......_ | 2 | 75 |
| VMR_0845 | prv-miR-9-5p | 7 | _......_ | 2 | 75 |
| VMR_0507 | mdv2-miR-m23* | 1 | ......__ | 6 | 75 |
| VMR_0436 | mcmv-miR-m23-1-3p | 1 | __...... | 6 | 75 |
| VMR_0421 | mcmv-miR-m01-1 | 8 | _......_ | 3 | 75 |
| VMR_0306 | hsv1-miR-h3* | 1 | __...... | 6 | 75 |
| VMR_0298 | hsv1-miR-h16 | 7 | __...... | 2 | 75 |
| VMR_0028 | bhv1-miR-b6* | 2 | ......__ | 7 | 75 |
