| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gtctgag | 7 | ||
| VMR_0277 | hsv1-miR-132792 | 2 | ....... | 8 | 100 |
| VMR_0389 | jcv-miR-j1-5p | 2 | _...... | 7 | 85 |
| VMR_0325 | hsv2-miR-h2 | 1 | _...... | 6 | 85 |
| VMR_0100 | ebv-miR-bart11-5p | 6 | ......_ | 1 | 85 |
| VMR_0039 | bkv-miR-b1-5p | 2 | _...... | 7 | 85 |
