| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gtggatgg | 8 | ||
| VMR_0736 | prv-miR-5-5p | 1 | ........ | 8 | 100 |
| VMR_0742 | prv-miR-5-5p | 1 | _....... | 7 | 87 |
| VMR_0741 | prv-miR-5-5p | 2 | ......._ | 8 | 87 |
| VMR_0735 | prv-miR-5-5p | 2 | ......._ | 8 | 87 |
| VMR_0730 | prv-miR-5-5p | 2 | ......._ | 8 | 87 |
| VMR_0722 | prv-miR-5-5p | 2 | ......._ | 8 | 87 |
| VMR_0058 | bmnpv-miR-4 | 2 | ......._ | 8 | 87 |
| VMR_0231 | hcmv-miR-ul70-3p | 1 | .g...... | 8 | 87 |
| VMR_0074 | dev-miR-d18-3p | 8 | .g...... | 1 | 87 |
| VMR_0988 | rlcv-miR-rl1-20-3p | 2 | ......__ | 7 | 75 |
| VMR_0777 | prv-miR-7-5p | 2 | __...... | 7 | 75 |
| VMR_0773 | prv-miR-7-5p | 2 | __...... | 7 | 75 |
| VMR_0769 | prv-miR-7-5p | 2 | __...... | 7 | 75 |
| VMR_0737 | prv-miR-5-5p | 1 | __...... | 6 | 75 |
| VMR_0734 | prv-miR-5-5p | 3 | ......__ | 8 | 75 |
| VMR_0726 | prv-miR-5-5p | 3 | ......__ | 8 | 75 |
| VMR_0257 | hhv6b-miR-ro6-4* | 2 | __...... | 7 | 75 |
| VMR_0240 | hcmv-miR-us29-5p6 7 | 1 | _......_ | 6 | 75 |
| VMR_0237 | hcmv-miR-us25-2-3p | 6 | ......__ | 1 | 75 |
