| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gttttctc | 8 | ||
| VMR_0497 | mdv2-miR-m18-5p_-1_5 | 1 | ........ | 8 | 100 |
| VMR_0519 | mdv2-miR-m28-5p_-2_5 | 1 | _....... | 7 | 87 |
| VMR_0517 | mdv2-miR-m28 | 1 | _....... | 7 | 87 |
| VMR_0496 | mdv2-miR-m18-5p | 2 | ......._ | 8 | 87 |
| VMR_0485 | mdv1-miR-m9-5p | 1 | _....... | 7 | 87 |
| VMR_0355 | hvt-miR-h13 | 1 | _....... | 7 | 87 |
| VMR_0915 | rcmv-miR-r1-2 | 1 | __...... | 6 | 75 |
| VMR_0914 | rcmv-miR-r1-2 | 1 | __...... | 6 | 75 |
| VMR_0377 | hvt-miR-h9-5p | 1 | __...... | 6 | 75 |
| VMR_0270 | hpv6-miR-h1 | 3 | ......__ | 8 | 75 |
| VMR_0123 | ebv-miR-bart2-5p | 3 | _......_ | 8 | 75 |
| VMR_0116 | ebv-miR-bart2 | 3 | _......_ | 8 | 75 |
