| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | taatgct | 7 | ||
| VMR_0471 | mdv1-miR-m4-5p | 2 | ....... | 8 | 100 |
| VMR_0469 | mdv1-miR-m4 | 2 | ....... | 8 | 100 |
| VMR_0397 | kshv-miR-k12-11 | 2 | ....... | 8 | 100 |
| VMR_0569 | ohv2-miR-17-25 | 2 | _...... | 7 | 85 |
| VMR_0105 | ebv-miR-bart14 | 3 | _...... | 8 | 85 |
