| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tacgtgct | 8 | ||
| VMR_0899 | rcmv-miR-r111.2-1 | 1 | ........ | 8 | 100 |
| VMR_0898 | rcmv-miR-r111.2-1 | 1 | ........ | 8 | 100 |
| VMR_1173 | sgiv-miR-3 | 3 | _......_ | 8 | 75 |
| VMR_1139 | rrv-miR-rr1-7-3p | 7 | _......_ | 2 | 75 |
| VMR_1138 | rrv-miR-rr1-7-3p | 7 | _......_ | 2 | 75 |
| VMR_1137 | rrv-miR-rr1-7-3p | 7 | _......_ | 2 | 75 |
| VMR_1136 | rrv-miR-rr1-7-3p | 7 | _......_ | 2 | 75 |
| VMR_0334 | hsv2-miR-h4-3p | 2 | __...... | 7 | 75 |
| VMR_0161 | hbv-miR-b20-3p | 1 | __...... | 6 | 75 |
