| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tagcacca | 8 | ||
| VMR_0049 | blv-miR-b4-3p | 1 | ........ | 8 | 100 |
| VMR_0047 | blv-miR-b4 | 1 | ........ | 8 | 100 |
| VMR_0050 | blv-miR-b4-3p | 1 | ........ | 8 | 100 |
| VMR_0048 | blv-miR-b4-3p | 1 | ........ | 8 | 100 |
| VMR_1057 | rlcv-miR-rl1-6-3p | 1 | ......._ | 7 | 87 |
| VMR_0502 | mdv2-miR-m21 | 2 | _....... | 8 | 87 |
| VMR_0104 | ebv-miR-bart1-3p | 1 | ......._ | 7 | 87 |
| VMR_0420 | kun-miR-1 | 8 | .c...... | 1 | 87 |
| VMR_1225 | tumv-miR-s44 | 3 | ......__ | 8 | 75 |
| VMR_1187 | tumv-miR-s1 | 2 | __...... | 7 | 75 |
| VMR_1055 | rlcv-miR-rl1-5-3p | 2 | __...... | 7 | 75 |
| VMR_0565 | ohv2-miR-17-21 | 2 | _......_ | 7 | 75 |
| VMR_0393 | kshv-miR-k12-1* | 3 | _......_ | 8 | 75 |
| VMR_0371 | hvt-miR-h5 | 8 | __...... | 3 | 75 |
| VMR_0126 | ebv-miR-bart3-3p | 2 | __...... | 7 | 75 |
| VMR_0124 | ebv-miR-bart3 | 2 | __...... | 7 | 75 |
