| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tagcaggc | 8 | ||
| VMR_0118 | ebv-miR-bart20-5p | 1 | ........ | 8 | 100 |
| VMR_0975 | rlcv-miR-rl1-16-5p | 2 | _....... | 8 | 87 |
| VMR_0609 | prv-miR-10-1 | 7 | __...... | 2 | 75 |
| VMR_0608 | prv-miR-10-1 | 8 | __...... | 3 | 75 |
| VMR_0607 | prv-miR-10-1 | 8 | __...... | 3 | 75 |
| VMR_0605 | prv-miR-10-1 | 8 | __...... | 3 | 75 |
| VMR_0602 | prv-miR-10-1 | 7 | __...... | 2 | 75 |
| VMR_0597 | prv-miR-10-1 | 8 | __...... | 3 | 75 |
| VMR_0560 | ohv2-miR-17-15 | 1 | ......__ | 6 | 75 |
| VMR_0442 | mcmv-miR-m59-1 | 2 | ......__ | 7 | 75 |
| VMR_0282 | hsv1-miR-425 | 1 | ......__ | 6 | 75 |
