| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tagtgtt | 7 | ||
| VMR_0394 | kshv-miR-k12-10a | 1 | ....... | 7 | 100 |
| VMR_0390 | kshv-miR-k10a_+1_5 | 2 | ....... | 8 | 100 |
| VMR_1096 | rrv-miR-rr1-15-3p | 2 | _...... | 7 | 85 |
| VMR_1095 | rrv-miR-rr1-15-3p | 2 | _...... | 7 | 85 |
| VMR_0522 | mdv2-miR-m30 | 7 | _...... | 2 | 85 |
| VMR_0139 | ebv-miR-bart9 | 7 | _...... | 2 | 85 |
